free-energies topic

List free-energies repositories

pymbar

222
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89
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Python implementation of the multistate Bennett acceptance ratio (MBAR)

FreeSolv

94
Stars
53
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Experimental and calculated small molecule hydration free energies

PyDHAMed

19
Stars
7
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Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations

GuthrieSolv

30
Stars
9
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Experimental small molecule hydration free energy dataset

ProtoCaller

44
Stars
15
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Full automation of relative protein-ligand binding free energy calculations in GROMACS