kinetic-modeling topic
PyEMMA
🚂 Python API for Emma's Markov Model Algorithms 🚂
AMICI
Advanced Multilanguage Interface to CVODES and IDAS
PyDHAMed
Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations
ARC
ARC - Automatic Rate Calculator
enspara
Modeling molecular ensembles with scalable data structures and parallel computing
biomass
A Python Framework for Modeling and Analysis of Signaling Systems
stochpy
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
pysces
The official PySCeS project source code repository.
MEWpy
Metabolic Engineering Workbench
hyperpolarized-mri-toolbox
The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code for...