markov-state-model topic

List markov-state-model repositories

PyEMMA

304
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118
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🚂 Python API for Emma's Markov Model Algorithms 🚂

deeptime

709
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77
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Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

msmtools

39
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24
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Tools for estimating and analyzing Markov state models

apicultor

19
Stars
5
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[Deprecated] py2.7 API.Cultor: Another BigData approach to sound collections

enspara

33
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15
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Modeling molecular ensembles with scalable data structures and parallel computing

AF-cryptic-pocket

21
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2
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Cryptic pocket prediction using AlphaFold 2

MasterMSM

18
Stars
8
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Python package for generating Markov state models