kraken2 topic

A simple nextflow pipeline for running kraken2 and bracken in a docker container

angelovangel

A pipeline to investigate horizontal gene transfer from NGS data

nf-core

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

FOI-Bioinformatics

Calculate confidence scores from Kraken2 output

Ivarz