biophysics topic
apbs-pdb2pqr
APBS - software for biomolecular electrostatics and solvation
pycontact
Analysis of non-covalent interactions in MD trajectories
biskit
A Python platform for Structural Bioinformatics
apbs
Software for biomolecular electrostatics and solvation calculations
electrostatics.github.io
APBS & PDB2PQR - software for biomolecular electrostatics and solvation
pdb2pqr
PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
enspara
Modeling molecular ensembles with scalable data structures and parallel computing
KIF
KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.
aLENS
a Living ENsemble Simulator -- a lens to help you watch biophysics
Clustering
Robust and stable clustering of molecular dynamics simulation trajectories.