Tom Pollard
Tom Pollard
In https://github.com/tompollard/tableone/pull/153 we added pyright type checking to the github workflow. Currently we are dodging a large number of errors with `# type: ignore` comments. These need to be removed...
We are no longer using the Travis CI tests. We should migrate (and improve) the workflow specified in https://github.com/tompollard/phd_thesis_markdown/blob/main/.travis.yml to GitHub actions.
I'm sorry in advance for (1) not following the issue template and (2) using incorrect language when referring to SSSOM concepts. I am new to this and still getting familiar...
Someone registers for PhysioNet with a name containing non-US English characters (e.g. "à") and then attempts to request access to the MIMIC-III Clinical Database project. After agreeing to the terms...
The [MIMIC-II importer package](https://physionet.org/works/MIMICIIClinicalDatabase/files/) includes a script call "resetdb" which deletes the entire Postgres database cluster when run (i.e. deletes all Postgres databases on the system, not just MIMIC). It...
There does not appear to be a logout button for PhysioNet. To find out how to logout, the user has to navigate to the "[Login or Create Account](https://physionet.org/users/login.shtml)" page (not...
The PhysioNet website (and accompanying emails) should be updated to make it clear that MIMIC-II is no longer supported by the lab and that researchers should instead be using MIMIC-III.
It would be good to add some integrity checks that can be run at the end of the migration, to check that data has copied across correctly.
Add testing framework. Run on Travis or Shippable.
The current approach (`_copy_data`) for loading data from the source database relies on limit + offset, which is slow. Replace it with a faster approach, perhaps using yield_per or a...