Whippet.jl
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timbitz
Lightweight and Fast; RNA-seq quantification at the event-level
I left a previous issue detailing my struggles but I have updated the Julia version and managed to sort through those errors. Now I am getting a new error (below)....
Hello all, I have two questions about the complexity column in the .psi.gz output files I hope to seek help from you. 1) Are the values in this column a...
Hi there, Have you tried to generate VCF/VEP files using Whippet output files or do you have any suggestions on this issue? You are greatly appreciated if anyone can provide...
Thanks for the interesting tool! I wanted to ask for your suggestion on optimal value for --bam-min-reads parameter when working with human data. I have 8 samples (paired end RNA-seq)...
Hi! I might probably miss it from the publication - how do you calculate Probability for deltapPsi in .diff.gz? Thank you!
Hello Whippet team! I am trying to build a BAM supplemented index on Whippet. I used samtools to combine multiple bam files, remove duplicates, sort and index the bam file....
This PR proposes to update the Whippet.jl license to LGPL2.1 for the next release of Whippet. This will require than any and all future versions of Whippet remain open-source and...
Hi Whippet team, I've enjoyed using the tool, and grateful for the work you all did on this. I was trying to use the `--biascorrect` flag and kept experiencing this...
Hi, may I ask if **fasta** file can also be used as input besides **fastq** files? Also, sometimes it takes a lot of computing resources to redo the alignment. May...
Hi, Thank you for developing whippet. Very useful tool! I've a paired-end reverse strand-specific dataset where I tried to use alignments to the reference genome (bam files) to complement the...
