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theislab
CellRank: dynamics from multi-view single-cell data
Move from ``bioconda`` to ``conda-forge`` https://github.com/conda-forge/staged-recipes/pull/19264.
**IMPORTANT: Please search among the [Pull requests](../pulls) before creating one.** ## Description Updates kernels/estimators ``__str__/__repr__`` and allows for better method chaining. ## How has this been tested? TODO ## Closes...
At the moment, our estimators have a `backward` mode which is indented to study the dynamics of the "backward" Markov process. I would change the interpretation of this and unify...
... This could be part of the [kernel tricks](https://cellrank.readthedocs.io/en/stable/auto_examples/kernels/compute_kernel_tricks.html#sphx-glr-auto-examples-kernels-compute-kernel-tricks-py) example.
... If you show me how to do this for one case @michalk8 I can do it for the others. Thanks!
... At the moment, our API menu looks like this:  That's not very nice, the list is way too long. In contrast, scVi-tools displays...
Dear cellrank team, thanks for the wonderful software! Recently, I get this error and can't repeat my result anymore. The env did not have been modified. ``` Computing Schur decomposition...
- [ ] Additional function parameters, change functionality or change defaults? - [ ] New estimator in `cr.tl.estimators`? - [ ] New kernel in `cr.tl.kernels`? - [ ] New gene...
As we saw recently when we were debugging @WeilerP's data example, it makes sense to have a utility to learn something about transient and recurrent classes in a Markov chain....
**IMPORTANT: Please search among the [Pull requests](../pulls) before creating one.** ## Description Throws an error when calculating the transition matrix with the `RealtimeKernel` with `self_transitions` provided but not `conn_weight` (or...
