cellrank

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## Description Computing the transition matrix with the RealtimeKernel with `self_transitions="all"` but not providing a weight for the connectivities, _i.e._, not passing `conn_weight`, results in the error ```pytb --------------------------------------------------------------------------- ValueError...

WeilerP

Also fix rest as mentioned in #885

michalk8

Minor quality of life improvements

1

Got 3 changes to the API I'd like make: - make `__repr__` and `__str__` be the same (or swap them); this means that we don't have to run `print(ck)` to...

michalk8

Refactor old internal functions

3

As discussed in https://github.com/theislab/cellrank/issues/714#issuecomment-917201143, we should refactor the following functions (some may be missing) to prevent bugs/increase maintainability: - `_map_names_and_colors` - `_merge_categorical_series` - `_fuzzy_to_discrete`

michalk8

Hello, I am trying to plot the coarse-grained transition matrix of my data computed with the Pseudotime Kernel and am running an error where it makes most of the plot,...

sneddonucsf

Hi, If I have a dataset with cells with distinct cell states and lineages and run **differential kinetics** as scvelo suggested, will the result of cellrank still be reliable? Thank...

BW15061999

Update `heatmap`

1

## Description * Adds argument `title` to the `heatmap` function and displays it if set. ## Closes Closes #1159.

WeilerP

Add TSI score code

2

## New * Adds `GPCCA::get_tsi` to compute terminal state identification (TSI). * Adds `GPPCA::get_tsi_score` to compute TSI score. * Adds `GPCCA::plot_tsi` to visualize TSI. ## Closes Closes #1165.

WeilerP

Add CBC score

1

## Description * Adds cross-boundary correctness (CBC) score ## Closes Closes #1167.

WeilerP

## Description To compare two kernels, the cross-boundary correctness score needs be implemented.

WeilerP