Till Hartmann
Till Hartmann
What do `logs/vep/cache.log` and `logs/get-genome.log` say?
The tests fail because no credentials (i.e. environment variables `COSMIC_EMAIL` and `COSMIC_PW`) are defined. Since we probably don't want a dummy account stored in this repo's github secrets, it's best...
Yes, I guess that'd be a good place to put it.
Yes, I thought that is what was happening, too, but it happens with both single and double quotes, and both with bash and zsh.
Ah, I see, that indeed solves the issue! The CLI help explicitly states `--info='...'`. If that is not intended, the help page should reflect that (and error on incorrect usage).
Here's a more convenient option: remember last export settings.
Hi @sravel I've modified the code to use tokenize.LBRACE/RBRACE and added a testcase which makes use of f-strings (and should simply error when parsing goes awry). Is that okay with...
> I get the same error with the test vcf you provided. > > However, I debugged this myself: I am executing `vembrane` as a singularity container (see my second...
@ptrebert any news on this?
Closing due to inactivity, reopen if needed.