Till Hartmann
Till Hartmann
Right now, there's only `--transcript-source` to restrict to ensembl, refseq or both. But the point of this proposal is that in the case of `both`, have a priority of one...
Closing this, feel free to re-open if you feel this is still relevant/needed!
Agreed (as long as the initial README still contains some basic information / usage examples for getting started quickly)
Related: #206 split the main README into smaller parts.
The issue of course is that we have a record centric view within vembrane, while oxbow has a column centric view. So either we'd have to craft records (in which...
But why should normalization functionality be replicated in mehari? Makes much more sense to stick to `bcftools norm`, since that already exists and is (in some way or another) tried...
~TODO: update conda pin once mehari 0.36.1 is available from bioconda~ done
Rough estimate of when "eventually" will be?
The SO term is available and annotated only if there are no overlapping transcripts found, see https://github.com/varfish-org/mehari/blob/bfd396b279393ffc2569424e58c322d9a135e5df/src/annotate/seqvars/csq.rs#L197-L222
Hm, annonars is built successfully, but execution fails: https://dev.azure.com/bioconda/bioconda-recipes/_build/results?buildId=71346&view=logs&j=e14e69ff-a0ae-55c4-b71d-229b239cfb2f&t=7df82132-b284-504b-53d6-7d3e63519572&l=1498 which is very likely due to the fact that we use librocksdb shipped with the conda-forge rocksdb package in this recipe,...