Till Hartmann

This PR adds a dinopy version of fqcnt, which uses some cythonization internally.

Add cosmic database download wrapper

3

This PR adds a wrapper for downloading files from [COSMIC](https://cancer.sanger.ac.uk/cosmic/download). It expects the following parameters to be set: - `build` (at the moment either "GRCh37" or "GRCh38") - `dataset` (at...

argument parser doesn't handle `=` in --arg=value

5

Given an invocation of slivar such as `slivar expr --info="INFO.some_integer >= 2" -v slivar-example.vcf`, a syntax error occurs: > duko.nim(71) compile > Error: unhandled exception: SyntaxError: parse error (line 1)...

- [ ] Handle `FORMAT` properly (and make it easy to use) - [x] Swap order access from `FORMAT[sample][field]` to `FORMAT[field][sample]` (#65) - [ ] Parse genotyping info from `FORMAT`...