Till Hartmann
Till Hartmann
*Should* be fixed with https://github.com/varfish-org/mehari-data-tx/pull/50 -- but I will verify with the examples given by Oliver first.
Should now really be fixed with https://github.com/varfish-org/mehari-data-tx/pull/54 and the upcoming 0.7.6 txdb release
Related to #534 ?
At the moment, we graft ensembl MT transcripts for RefSeq.
Hm, these example should work, the indexing should be fine with both an index (`0`) and a sample name (`SAMPLES[0]`). If it isn't, this is a bug/regression, not a documentation...
For input: - ✔️ vcf.gz + cyvcf2 backend works fine: `vembrane filter --backend cyvcf2 "True" foo.vcf.gz` - ❌ vcf.gz + pysam backend does not work: `vembrane filter --backend pysam "True"...
We do this in [https://github.com/varfish-org/mehari-annotation-comparison](https://github.com/varfish-org/mehari-annotation-comparison) but this potentially needs some tidying up and a README
Ah, very good point. Indeed, it should be possible to supply multiple references but at the moment there isn't. We will fix this ;)
This should be fixed in #749. If you're comfortable with building from source, I'd be glad if you could give it a try.
With utoipa, openAPI schema and corresponding new `api/v1/…/` endpoints, the `genes/txs` endpoint is now `api/v1/genes/transcripts` and uses `genome_build=grch37` instead of `genomeBuild=GENOME_BUILD_GRCH37` as parameters. However, it still says `genome_build` in contrast...