sxh1136

Looking for PlasmidDatabase and non-Plasmid Contigs dataset

2

Hi there, I'm looking for the two datasets named in the title. This link - http://data.cab.spbu.ru/index.php/s/tz7mCqDipgbcsbW - shown in the paper - https://genome.cshlp.org/content/29/6/961.full, results in a file not found error....

Getting the metaplasmidspades script

2

Hi there, I've been trying to get metaplasmidspades to work but I'm having difficulties. Could someone guide me please? I've tried cloning the assembler repository where "metaplasmidspades.py" is (https://github.com/ablab/spades/tree/metaplasmid_3.13.0/assembler) but...

Some other tools to include?

1

I've been compling a list of phage tools for something I'm writing and came across this GitHub. This looks really exciting and I look forward to trying this out. I...

Hi there, I was just wondering if contigs need to be filtered by score as well as q-value as the virfinder/deepvirfinder papers appear to only be filtered by q-value? Thanks

||lt2gene scores

1

Hi there, I wanted to ask why fragments with the suffix ||lt2gene dont get any scores in the results but instead just get filled with "nan" Thanks in advance

Hi there, Thanks for sharing your scripts for VirMiner. I just wanted to ask whether we need to download the KOBAS organism data package/species data package and configure the KOBAS...