PyHealth

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## Summary This PR introduces BERT-based models for text classification tasks in healthcare applications, enabling fine-tuning of pre-trained language models on clinical and biomedical text data. PyHealth currently lacks native...

hungngo2

**1. Who you are (netid if Illinois student)** brianc6 **2. What type of contribution you are making** Model contribution **3. A high level description of what you've done** Implemented a...

bwchiu

Contributors:
Anish Sao (sao3), Kristopher Iotov (kiotov2) Contribution type:
New example / use case of PyHealth. High-level description:
This PR adds an example script examples/labtop_example/labtop_demo.py which demonstrates the Lab Test...

anishsao

Contributor: Naveen Baskaran Contribution Type: Interpretability method, Tests, Example ### Description This PR implements the SHAP (SHapley Additive exPlanations) interpretability method for PyHealth models, enabling users to understand which features...

naveenkcb

This pull request introduces a new dataset loader, MIMICCXRReportDataset, which provides structured access to radiology reports derived from the MIMIC-CXR dataset. This contribution expands PyHealth’s support for text-based clinical tasks...

TahyunM

I fixed the code for the eICU dataset to now have a yaml file definition, and the dataset is now based on the new BaseDataset class. I also added the...

rsponholtz

https://arxiv.org/abs/2502.10689 An example using Pytheath and MIMIC 3 to recreate some parts of this paper

elisevpaul

# Contributors - mjoan2 - lu94 - jesusaj2 # Type of Contribution **Task + Example** - New task implementation for text extraction from MIMIC-IV EHR data, along with a complete...

jimenezzz

# Add MMTM (Multimodal Transfer Module) Model and MMTMLayer for Multimodal EHR Fusion This PR adds MMTM (Multimodal Transfer Module) and MMTMLayer to the PyHealth model library. MMTM is a...

stuti-agrawal

## Synthetic EHR Data Evaluation Example ### Description This PR adds a comprehensive example demonstrating how to evaluate synthetic Electronic Health Record (EHR) data quality using PyHealth. ### Contribution Type...

willhunnius