PyHealth

PyHealth copied to clipboard

## Purpose This pull request aims to add the drug information dataset from the [Genomics of Drug Sensitivity in Cancer](https://www.cancerrxgene.org/) to the pyhealth library. The GDSC drug_info table is a...

anumala2

Stephen Moy moy26 N/A Paper Title N/A Paper Link This task aggregates MIMIC-III clinical notes by patient and applies a large language model (e.g., FLAN-T5) to classify whether the patient...

stephenmoy14

ritwikbiswas

Fairness metric testing of PyHealth RNN readmission prediction model using the Synthetic MIMIC-III dataset. Synthetic sensitive attributes are used for baseline auditing purposes and to align with the goals of...

Fahad-Z

Type: Dataset Contribution Paper Title: The HAM10000 dataset: A large collection of multi-source dermatoscopic images of pigmented lesions Paper Link: https://www.nature.com/articles/sdata2018161 Dataset: https://www.kaggle.com/datasets/kmader/skin-cancer-mnist-ham10000 Description: Adds the HAM10000 dataset with basic...

kdural2

## Who I am - Name: Hyunsoo Lee - NetID: hyunsoo2 ## Type of contribution - New model (SHy: Self-Explaining Hypergraph Neural Network) - New tasks (DiagnosisPredictionMIMIC3 / DiagnosisPredictionMIMIC4) -...

wanttomakeyousmile

Add TCGA-PAAD Dataset (Pancreatic Adenocarcinoma) - Introduces TCGA PAAD Dataset for TCGA-PAAD with standardized mutations and clinical tables. - Config: [tcga_paad.yaml](vscode-file://vscode-app/c:/Users/musta/AppData/Local/Programs/Microsoft%20VS%20Code/resources/app/out/vs/code/electron-browser/workbench/workbench.html) defines two tables: mutations (hugo_symbol, variant_classification, variant_type, hgvsc, hgvsp,...

mustafa-sadiq

CS 598 Fall 2025 Final Project PyHealth Contribution for Akhilesh Khambekar, Jadepan Thedthong, Afraz Jaweed.

akhileshkh

1. uiuc-598 dlh group project - ziweim2, yilin17 2. What type of contribution you are making: example use case 3. demonstrates how to load the MIMIC-IV dataset, apply the `Readmission30DaysMIMIC4`...

kimpossible6

# Add COVID-RED Dataset, Detection/Prediction Tasks, and Example ## Summary This PR adds support for the **COVID-RED (Remote Early Detection of SARS-CoV-2 infections)** dataset to PyHealth, including: - A wearable...

jpolsgrove