sunbeam
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sunbeam-labs
A robust, extensible metagenomics pipeline
When I try to run the installation script I get this error: install.sh: line 152: /home/clairmontl/miniconda3/envs/sunbeam/etc/conda/activate.d/env_vars.sh: No such file or directory 2021-06-02 17:49:14 UTC [ error] Error in /isilon/clarimontl/sunbeam-stable/install.sh in...
Hello, I'm running into an issue when running the kraken2_classify_report rule. It appears that the system's memory (268GB) keeps increasing when switching to different samples until no space is available...
hi all, I've performed a local install of sunbeam on our cluster and received this as output from `bash tests/run_tests.bash -d /home/bbrow6/tmp/` Running setup... ✔ Running build_test_data... ✔ Running test_all......
Title. Also many of them could benefit from a README update. Am working through these at my own leisure; anyone is welcome to help out if they feel like it!...
Hello, I managed to install sunbeam successfully with some workaround (added git to the sunbeam conda environment) but now am not passing the tests. This is the specific error message...
Hi, I run sunbeam test after installing but failed. the log mentioned something about memory, but I do not know exactly the bug is. Thanks ---------------------------error line--------------------------- [Tue Mar 16...
Dear developers of the Sunbeam, This is Seonyeong from South Korea. After installing Sunbeam into our linux server, in order to check if our installation is done correctly, we ran...
I am using the Sunbeam pipeline for analyzing metagenome data, on a Windows server, with WSL 1 (Ubuntu 18.04). I get the same error every time I try to run...
I just installed Sunbeam on the HPC, and I am encountering a problem with the test. I get the following error message: Error occurs when assembling contigs for k =...
Hi sunbeam team, I have been modifying a bit the `mapping` rule locally to be able to run only mapping with then the `samtools flagstats` command on all of them...
