sunbeam
sunbeam copied to clipboard
sunbeam-labs
A robust, extensible metagenomics pipeline
Megahit created a blank `final.contigs.fa` file on my smallest sample (2 million reads). `final.contigs.fa.300fa` file is missing. I don't have issues with other samples. The job ran with no apparent...
* [ ] I have run `bash tests/test.sh` on a local deployment and the tests passed successfully * [ ] If this adds a new output file, I have added...
* [ ] I have run `bash tests/test.sh` on a local deployment and the tests passed successfully * [ ] If this adds a new output file, I have added...
HI When I install sunbeam,I get a error.I see the code about it,but I do not know about "-d .git ". The git had been installed before. why?  
I used the sunbeam,but I have a problem about the result.I want to get some common sequence from different samples for the table. How?
* [x] I have run `pytest .tests/` on a local deployment and the tests passed successfully * [x] If this adds a new output file, I have added a check...
**What's the feature?** Make any necessary changes for sunbeam to be compatible with storage plugins (being tested with S3 plugin)
* [ ] I have run `pytest .tests/` on a local deployment and the tests passed successfully * [ ] If this adds a new output file, I have added...
**Describe the bug** Docker tags have a 'v' in front of them right now but the references to them don't
**What's the feature?** At the moment logging is a little fractured between snakemake's `log` and `stdout/stderr`. The former is better in local execution situations while the latter is better when...