CellChat
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sqjin
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Hello, I tried to use a Cellchat in order to subcluster input datasets as its functionality.  I'd like to sort the cells corresponding to the groups (1-4). Could you...
Hello, I have two cellchat objects, but their cell types are completely different. Can the two be combined? If so, how should it be merged?
I chose CellChat to study potential cell-to-cell interaction and I'd like to thank you for developing these amazing tools. I've generated scRNA-seq datasets (20 patients with 5 groups where each...
Hello, I made an heatmap of the mat matrix, in order to understand the patterns of interactions among my cell types. However, I noticed that the pattern of interaction of...
What makes the difference in relative information flow #400 In the figure, the relative information flow in Figure A does not match the information flow in Figure B. For example,...
In mouse db you have pathway SEMATOSTATIN. I believe this may be wrongly spelled SOMATOSTATIN.
I would want to find differential pathways between cell type pairs for a design of ~condition+batch. Is there a way to do this? E.g. can I directly compare probabilities computed...
Hi all, I wanted to used the netVisual_chord_gene function like presented in the vignette to visualize all interactions sent from two of my clusters to a third. However, the plot...
Hi, I am just getting used to using CellChat and it is thus far been really useful! I'm currently running into an issue with the `remove.isolate` when I run `netVisual_circle()`....
How does CellChat handle redundant signalling? In other words, what happens if multiple ligand sources and receptor targets from the same ligand-receptor pair are spread across cell groups? Can communication...
