Steffen Neumann

It's important to have ISAconfigurator be configurable with decent defaults if you do an institute-wide deploy, either with web-start or with an installation on a network share. It should be...

Wrong =HYPERLINK() syntax

1

Hi, when adding a term, Ontomaton will insert `=HYPERLINK("http://purl.obolibrary.org/obo/MS_1000702","micrOTOF")` which results in a parsing `#ERROR` complaint by google. The correct content will be using a semicolon instead: `=HYPERLINK("http://purl.obolibrary.org/obo/MS_1000702";"micrOTOF")` Fixing will...

Hi, needs testing if this works in a, say, UK locale where the comma is default separator. If not, the google script needs to determine what to use :-( closes...

zpool not importable and ASSERT at zdb.c:3908:load_concrete_ms_allocatable_trees()

3

### System information Type | Version/Name --- | --- Distribution Name | Ubuntu Distribution Version | 20.04 Kernel Version | 5.4.0-132-generic #148-Ubuntu SMP Mon Oct 17 16:02:06 UTC 2022 Architecture...

Hi, it would be cool if lodestar saved my queries (maybe in cookies?) , so I can redo them when coming back. Similar to the "recent activity" box in PubMed:...

Add tests for some ion mobility files

1

Hi, we should test the reading and peak picking functions some time in the future how well it handles peculiarities in IMS data. An addendum to the mzML spec says:...

upcoming change in rgl will break xcms

3

See https://stat.ethz.ch/pipermail/bioc-devel/2023-January/019421.html for the message by Duncan, and the rgl Changelog https://dmurdoch.github.io/rgl/dev/news/index.html for functions to be deprecated. Needs 1) checking which function(s) use rgl functions, and 2) deciding whether to...

Hi, the mzML writer uses a second pass when writing indexed mzML. This silently produces incorrect output if the target is not a proper file: ``` FileConverter -in LCMS-centroided.mzML -write_scan_index...

mzML writer: no valid checksum

1

Hi, The file [MSpos-Ex2-cyp79-48h-Ag-2_1-B,4_01_9830.mzML](https://github.com/sneumann/mtbls2/blob/master/inst/mzML/MSpos-Ex2-cyp79-48h-Ag-2_1-B%2C4_01_9830.mzML) was converted to mzML with ``` ``` and the checksum "0" in the index looks broken: ``` ... 21569054 21571144 0 ``` Yours, Steffen

Hi, I am using `shinyDirChoose` to browse and select stuff from filesystems with nesting (10-20 levels) and filenames (20-60 characters long) where the standard layout in `shinyDirChoose` will just cut...