smoretti

Missing dependencies and wrong python library

2

Hi I am building a container for biopieces for our cluster and found those issues (on the master branch) - JSON::XS is required by some tools but not listed in...

More statistics for reads

3

Hi could you add more statistics for reads in your very useful tool? - median read length - minimal read length & maximal read length (read length range)

I wonder what is the license of bioawk?

Pre-color nodes/branches possibilities

18

Hi I wonder if this is possible to pre-color some nodes/branches at load time. I use the NHX format for this, and to store other kind of information, but NHX...

trimal changes fasta headers when contain ':'

1

Hi I use trimAl v1.4.rev9 build[2012-08-09] and have problems with some sequence names. Some names look like 'TCOGS2:TC012457-PA'. (They are "official" names from the Tribolium castaneum genome) If I run...

Missing momentum2.mps.gz file

6

Hi I got an error when running *python2 setup.py test*: ``` ERROR: Failure: IOError ([Errno 2] No such file or directory: '/builddir/build/BUILD/optlang-1.4.2/slow_tests/data/miplib2003/momentum2.mps.gz') ``` python2 version 2.7.12

Hi I wonder what is your recommendation to analyze reads like (https://www.ebi.ac.uk/ena/browser/view/SRX1372530) which are paired-end but provided also with a single-end file.

Kallisto takes a lot of time for some small size libraries

1

Hi We use Kallisto v0.46.0 on Linux and it works very well. But sometimes for some small size libraries it takes much much longer than expected Those libraries are small...

typo

1

Hi our packaging system found this typo several times in the README.md file: **consenquently** should be **consequently**

How to display radicals with SMILES Drawer? e.g. https://www.ebi.ac.uk/chebi/searchId.do?chebiId=27140