fastp icon indicating copy to clipboard operation
fastp copied to clipboard

More statistics for reads

Open smoretti opened this issue 6 years ago • 3 comments

Hi could you add more statistics for reads in your very useful tool?

  • median read length
  • minimal read length & maximal read length (read length range)

smoretti avatar Oct 22 '19 09:10 smoretti

How about a read length histogram with a boxplot on top? :wink:

mschilli87 avatar Oct 22 '19 09:10 mschilli87

An histogram could be nice, but raw numbers in the JSON output would be more useful

smoretti avatar Oct 22 '19 09:10 smoretti

+1 this, median length before and after filtering would be super helpful as it should not be assumed that read lengths follow a normal distribution. Thanks for your consideration!

schorlton avatar Aug 03 '22 15:08 schorlton