Missing dependencies and wrong python library

[smoretti]

Hi

I am building a container for biopieces for our cluster and found those issues (on the master branch)

• JSON::XS is required by some tools but not listed in the Perl requirements
• lowercase_seq requires Args Python library. Maybe should be args
• usearch version 7 is required. Command line options changed with usearch version 11.
• Some tools like lowercase_seq requires a BP_DIR/bp_usage/ folder than is not in master branch

[maasha]

So it has been a while since I have used/maintained biopieces.

• I added JSON::XS to the list of dependencies is easy - that was the easy one.
• I don't know if Args is legacy - do try with args and see if it works.
• Unfortunately, I am not working with this stuff anymore, so I don't have time to support the latest Usearch. Pull requests welcome!
• I think the BP_DIR/bp_usage folder should created if you use the --recursive git flag when cloning the repo (which has a subrepo -> bp_usage). Otherwise it should simply be added to the docs.

[smoretti]

Thanks for your update. About Usearch, maybe simpler to say only Usearch v7 supported.