smoretti

# Description of the issue Hi I wonder if ibtol formula is right. As a butanol it should be **C4** not **C5**? If this is C4, it should be merged...

Several BiGG SBML models are invalid and cannot be easily read

4

Hi Several BiGG models are invalid in SBML format: - "listOfFluxObjectives cannot be empty" e.g. iMM1415, iSynCJ816, iAT_PLT_636, iRC1080 Some models have no objective functions (see #333), but other like...

Wrong formulae

3

# Description of the issue Some metabolites have a weird formula: - rdxo -> Fe1S0 - rdxr -> Fe1S0 - rbrdxOX -> UK - rbrdxRD -> UK UK means maybe...

Similar RtotalX metabolites or not?

2

Hi I wonder if the metabolites **Rtotal**, **Rtotal2** and **Rtotal3** are the same or not. It looks the stoichiometric coefficient associated with the R group is more an index -...

Formula in name but not in formulae field

1

# Description of the issue Some formula in names but not in formula field. List maybe not exhaustive: - arsenb - ferrich - ferxa - ficytcc - focytcc - hemeC...

Hi The chemical compound **hexACP** has formulae that do not match with those of its external database links. Is it a polymer?

shmr_map issue

4

I have the same issue as the one mentioned in #10 Do you know what could cause this?

Hi *mitochodrial* should be *mitochondrial* in description

Unicode characters useful in those entry names?

2

Hi Are unicode characters useful in those entry names? - CHEBI:139313 - G(8–O–4)S(8–5)G' - CHEBI:139294 - G(8–O–4)S(8–O–4)S(8–8)S - CHEBI:139293 - G(8–O–4)SP(8–8)S **–** is used and maybe the regular **-** is...

Extension of the Gene type expressedIn property

9

Hi Currently the _expressedIn_ property of the Gene type expects an anatomical entity (e.g. Uberon). Could it be extended to include also developmental stages, and sex and strain conditions for...