Shaun Jackman

@bbest Wow! That's fantastic! Oddly it doesn't work with TSV files. I've opened an issue https://github.com/theodi/csvhub/issues/8 to request this feature.

These are the git aliases that I use for diffing TSV and CSV files. ``` ini [alias] wdiff = diff --word-diff=plain wdiffc = diff --word-diff=color wdiffcsv = diff --word-diff=color --word-diff-regex=[^,]+...

[daff](https://paulfitz.github.io/daff/) works really well! 

It's not as pretty, but you can use `--word-diff=plain` instead of `--word-diff=color` inside of RStudio. It'll use `[-foo-]` to indicate removed text and `{+bar+}` to indicate added text. ``` ❯❯❯...

It's possible that RStudio could render the [ANSI colour code escape sequences](http://en.wikipedia.org/wiki/ANSI_escape_code#Colors). Certainly no harm in opening an issue with a feature request.

Could `gh browse 1234567...abcdef0` open `https://github.com/foo/bar/compare/1234567...abcdef0` similarly to how `gh browse 1234567` opens `https://github.com/foo/bar/commit/1234567`?

> I'm not sure what you mean by "open PRs to update dependencies". https://docs.github.com/en/code-security/dependabot/dependabot-version-updates > Keeping your dependencies updated automatically with Dependabot version updates > You can use Dependabot to...

Changing the Prodigal short CDS penalty from 250 bp to 100 bp rescues 2 of the missing 9 short genes.

Using `--meta` mode (`-m anon` in Prokka 2.7 from GitHub) saves 2 genes, and the combo of `-m anon` and reducing the short CDS penalty to 100 bp saves 6...

See - https://github.com/sjackman/Prodigal/tree/short-cds-penalty - https://github.com/sjackman/Prodigal/commit/8612e36b456f71e5baa8a2b873b2b9dcb59add7e