Shaun Jackman

The version number needs to be updated: https://github.com/edawson/gfakluge/blob/4f85178ddf1091d730c55f5f5754f49f972aa495/src/main.cpp#L10 You could move the `0.3.0` tag or tag a `0.3.1` release.

Short answer, yes. It's not valid GFA. Long answer. ABySS produces a GFA file of the segment records and edge records. For large genomes this file can be quite large....

Done. I removed `-fPIC`, because PIC code is less efficient than non-PIC code. Do you anticipate linking this static library into a shared library?

> Interesting. How big are these two files? For a human genome: FASTA: 2.9 GB S+E with * for sequences: 137 MB G: 10 MB Thanks again, Eric!

I've added a `brew cite` command! You can specify formula names or DOI on the command line. Output formats are DOI, URL, text, BibTeX, and Ruby. See `brew cite --help`...

You can install edirect using Homebrew/Linuxbrew. `brew install edirect`

The sed is a little tricker than grep, but not by much. This chunk: ``` ``` has to be changed to ``` ``` because the duplicate top-level `TaxaSet` element also...

Nice! Thank you for the quick and helpful response, @hyangah! 😁

You can use [`OciArtifact::get_layers`](https://docs.rs/ocipkg/latest/ocipkg/image/struct.OciArtifact.html#method.get_layers) rather than `ocipkg::distribution::get_layer_bytes`: ```rust let Some((_descriptor, blob)) = OciArtifact::from_remote(image_name.clone())? .get_layers()? .into_iter() .find(|(descriptor, _blob)| match descriptor.media_type() { MediaType::ImageLayerGzip => true, // application/vnd.docker.image.rootfs.diff.tar.gzip case MediaType::Other(x) if x.ends_with("tar.gzip") =>...

I'm interested in this topic.