Formulae fail after updating boost, linuxbrew

[tmozgach]

Install:

• [x] sga works in empty image =>something influences on it

Test:

• [ ] circlator https://github.com/Homebrew/homebrew-science/pull/6216
• [x] discovar https://github.com/Homebrew/homebrew-science/pull/6275 => RUN brew install [email protected] solves
• [x] express => RUN brew install [email protected] solves
• [x] kat RUN brew install [email protected] solves
• [x] mapsembler2 RUN brew install [email protected] solves
• [ ] mummer works in empty image =>something influences on it

/home/linuxbrew/.linuxbrew/Cellar/mummer/3.23_2/mummerplot -h 2>&1
Error: homebrew/science/mummer: failed
</U(sage|SAGE)/> expected to be =~
<"Can't use 'defined(%hash)' (Maybe you should just omit the defined()?) at /home/linuxbrew/.linuxbrew/Cellar/mummer/3.23_2/mummerplot line 884.\n">.

• [ ] poretools works in empty image =>something influences on it

==> /home/linuxbrew/.linuxbrew/Cellar/poretools/0.6.0_6/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /tmp/poretools--h5py-20170901-18
Last 15 lines from /home/linuxbrew/.cache/Homebrew/Logs/poretools/06.pip:
  Removing source in /tmp/pip-C409WA-build
Command "/home/linuxbrew/.linuxbrew/Cellar/poretools/0.6.0_6/libexec/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-C409WA-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-hdaw0X-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/linuxbrew/.linuxbrew/Cellar/poretools/0.6.0_6/libexec/include/site/python2.7/h5py" failed with error code 1 in /tmp/pip-C409WA-build/
Exception information:
Traceback (most recent call last):
  File "/home/linuxbrew/.linuxbrew/lib/python2.7/site-packages/pip/basecommand.py", line 215, in main
    status = self.run(options, args)
  File "/home/linuxbrew/.linuxbrew/lib/python2.7/site-packages/pip/commands/install.py", line 342, in run
    prefix=options.prefix_path,
  File "/home/linuxbrew/.linuxbrew/lib/python2.7/site-packages/pip/req/req_set.py", line 784, in install
    **kwargs
  File "/home/linuxbrew/.linuxbrew/lib/python2.7/site-packages/pip/req/req_install.py", line 878, in install
    spinner=spinner,
  File "/home/linuxbrew/.linuxbrew/lib/python2.7/site-packages/pip/utils/__init__.py", line 707, in call_subprocess
    % (command_desc, proc.returncode, cwd))
InstallationError: Command "/home/linuxbrew/.linuxbrew/Cellar/poretools/0.6.0_6/libexec/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-C409WA-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-hdaw0X-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/linuxbrew/.linuxbrew/Cellar/poretools/0.6.0_6/libexec/include/site/python2.7/h5py" failed with error code 1 in /tmp/pip-C409WA-build/

• [ ] repeatmasker
• [x] sdsl-lite brew test sdsl-lite --cc=gcc-4.9