sirius
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sirius-ms
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Hello, I am a researcher at the climate and environmental research institute NILU. We are performing nontarget analysis of various environmental samples and I would like to add SIRIUS at...
I followed the document [here](https://boecker-lab.github.io/docs.sirius.github.io/cli-standalone/#fragmentation-tree-export-tool) and got very errors when running. I ran it on windows. Firstly, I started a sirius-gui. I dragged the ms files into GUI and computed...
Good evening, I am currently facing challenges with exporting files in Sirius 5.8.3 on Mac. Specifically, I am unable to export the following three files: id/formula_candidate.tsv id/structure_candidate.tsv canopus_summary.tsv Despite executing...
Hello SIRIUS developers, I am currently using SIRIUS 5.6.3 CLI version and following the documentation: [SIRIUS Documentation - Custom Database](https://boecker-lab.github.io/docs.sirius.github.io/cli-standalone/#custom-database-tool) so according to current documentation: `sirius --input /Users/mahnoor/SL_Sirius.tsv --name SL_Sirius...
Hello, I wanted to know if there was a way to download the full list of compounds in the biomolecule structure database (bioDB)? Thanks.
I used sirius to predict molecular formulas on 27129 features (till 850 da, 27856 features total) Zodiac doesn't run because it takes too much memory and SIRIUS crashes (but that...
Hi, I'm trying to run Sirius for the first time and have a few questions about it. I want to generate decoy libraries according to this paper: https://www.nature.com/articles/s41467-017-01318-5. After some...
I have converted negative mode MS/MS data acquired on a bruker MaXis plus to .mzXml, using the GNPS vendor conversion folder system. When I try to import these negative mode...
In the "formula_identifications.tsv" table, molecular formulas are predicted for a total of 5049 compounds. However, only 3319 of these compounds have corresponding structures listed in the "compound_identifications.tsv" table. For the...
