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seqan
LAMBDA – the Local Aligner for Massive Biological DatA
Using `lambda3`, passing the -m/-acc-tax-map flag a file (e.g. nucl.accession2taxid.gz) returns with an error: > Validation failed for option -m/--acc-tax-map: Expected one of the following valid extensions: [accession2taxid,dat,accession2taxid.gz,accession2taxid.bgzf,dat.gz,dat.bgzf,accession2taxid.bz2,dat.bz2]! Got gz...
- [ ] introduce profiles - [ ] auto (auto-detect based on read length) - [ ] illumina (batch-processing, SIMD, small band if possible) - [ ] sanger (xdrop, larger...
- [ ] directly extract taxID from header if available, user specified regex? - [ ] double-check regex to make sure that single id is not matched twice - [...
Would it be possible to add an option to --outfmt (for .m8/.m9 output file extensions) for searchp and searchn to return the aligned portions of the query sequence/subject sequence? Thank...
Hello, I ran across a potential bug where pident was reporting 0.00 for some results. The test I ran was a sample against a protein database with the full UniRef100...
Thank you for the unix man(ual) pages! The Debian linter found a few issues with them. This might be more of a seqan issue, though. https://lintian.debian.org/maintainer/[email protected]#lambda-align2 1st issue: > `manpage-has-bad-whatis-entry`...
This is an addition to PR #211 . It replace another relabeling data structure and replaces it with a binary search on the accumulated sizes of the sequences. The created...
Dear lambda creators I think I may be missing something. I am trying to create a nucleotide index on a 677G fasta (nt) file and I get the expected error:...
