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Plotting different conditions together using pl.ligrec

3

Hi all, Thanks a lot for developing the great package. I've been using it for ligand receptor analysis and more recently with accumulation of different datasets, I would like to...

Tonyspuri

Calculate Moran's I statistic using `obsm` or `obs`

3

## Description Calculate Moran's I statistic using `obsm` or `obs` instead of just columns in `var` ... I was wondering if it would be possible to add this functionality to...

alam-shahul

Adding additional info for channels + option to leverage this info for visualisation purposes

3

### Type of the feature - [x] New function in `sqduipy.im`? - [ ] New function in `squidpy.gr`? - [ ] New function in `squidpy.pl`? - [ ] Change an...

MxMstrmn

Image segmentation and extract segmentation features

10

... Hello, I had a question concerning image segmentation and feature extraction. I am using a Visium image with H&E stains. When I follow your [tutorial](https://squidpy.readthedocs.io/en/stable/auto_examples/image/compute_segmentation_features.html) with your image, I...

Nasrine26

Improve import speed

3

## Description See if we can lazily-load `napari/pyqt5`, think these should be the main culprits (need to verify).

michalk8

clustering accounting for spatial coordinates

12

Not very clear idea, but something along these lines: https://www.biorxiv.org/content/10.1101/2020.09.04.283812v1 Maybe a way to achieve similar results without explicit modelling and inference. It's essentially a smoothing of cluster assignments on...

giovp

External module

2

### Type of the feature - [ ] New function in `sqduipy.im`? - [ ] New function in `squidpy.gr`? - [ ] New function in `squidpy.pl`? - [ ] Change...

giovp

Visualization gene expression by distance

5

### Type of the feature - [ ] New function in `sqduipy.im`? - [x] New function in `squidpy.gr`? - [x] New function in `squidpy.pl`? - [ ] Change an existing...

giovp

Initialize ImageContainer object using dask array

4

Hi squidpy team, I am just starting to try out squidpy and looks it really useful! I was wondering if it is currently possible to construct an ImageContainer object using...

morriso1

how to apply custom transformation to image crops before feature extraction

9

Hi, thanks for the awesome tool. I am interested in doing some kind of normalization/custom transformation on the image before I run feature extraction (calculate_image_features). But all of my attempts...

fedshyvana