Sascha Steinbiss
Sascha Steinbiss
Thanks, but I'm afraid I will need both complete input files. The sequence provided by you above looks a bit short (and in a strange format) and the GFF consists...
If that's OK with you, you could use a file hosting service such as Dropbox etc. to provide the files or drag & drop them into the comment box to...
Yes, it seems to work. I will need some time to look into the issue though...
Thanks, I was able to reproduce the issue using your test data. I'll see what I can do!
The question is whether we really need it. AFAICS explicit locking is done via `fcntl()` wrapped in `gt_xflock_with_op()`, which is only used in `gt_fa_lock*()`, which in turn is only used...
Could you probably try the latest released version of GenomeTools, 1.6.1? 1.5.9 is almost 4 years old... Please get it here from GitHub: https://github.com/genometools/genometools/archive/v1.6.1.zip Unfortunately Ubuntu 19.04 does not seem...
AFAICS this has been fixed in https://github.com/genometools/genometools/pull/857, which is in 1.5.10 and later. See https://github.com/genometools/genometools/pull/857/files#diff-9b16bcfc1e73e4289777123dbb219c04L181
LTRdigest creates a concatenation of all HMM files is is given via the `-hmms` parameter in `/tmp` and then runs `hmmpress` to prepare it for use with HMMER. If there...
Well, LTRdigest does not know it's being run multiple times at once, so it has no notion of a 'unique ID'. The fact that the same file is generated is...
Closing this as answered, feel free to reopen if you have more questions.