Sascha Steinbiss

Thanks for reporting this! Unfortunately I was unable to reproduce your issue with a test sequence of my choice. To allow for further debugging, could you perhaps - provide the...

Indeed this `.prj` file is missing the `longest` keyword, leading to the error. Could it be that you might still have remains from your first run in the directory but...

Hi Michel, exactly, `-tidy` should do what you are asking for. You can find the code for checking the CDS phases here: https://github.com/genometools/genometools/blob/master/src/extended/cds_check_visitor.c#L110 In principle, the CDS are being traversed...

IIRC I `Files-Excluded` the tutorial and some of the other docs in my first packaging because I was not sure about some of the license of some images etc. that...

Thanks for reporting and the good example case! I'll have a look at it as soon as I find the time.

I've had a look at the problem and as you already suspected the issue is caused by the IDs of the `five_prime_UTR` features. They are identical, causing the `five_prime_UTR` to...

Yes, I agree that is not the intended behavior. However, we need to find a way to make this consistent -- in your case, one would want both multifeatures drawn...

You are right. I will see when I find the time to extend the code to allow multiple multi-features collapsing into it as long as they do not overlap.

I'm currently having a look at the problem, and I think we need to fundamentally rethink how to handle such cases in which a parent has multiple multi-features as children,...

I just took a brief look and it seems to be caused by sequence `URS00000E9CEF` being contained in `URS00000EBA19`. If I change the sequence to remove that containment then we...