Sascha Steinbiss

@gordon Do you have any comments on this? Otherwise I will try and implement this behaviour by dropping features with invalid parents, including all their children.

Hi, thanks for reporting. Can you please provide some more information about your system, e.g. which operating system you are using and whether you compiled GenomeTools yourself (if so, using...

Thanks, but since your reply went to the issue tracker web interface, I can't see the attachment. Can you try posting it to an online store such as Dropbox etc.?...

Thank your for the file. However, I can not reproduce your problem: ``` $ gt sketch test.png MR1_a8_5th.all.txt warning: seqid "scf2" on line 2 in file "MR1_a8_5th.all.txt" has not been...

Hmm, strange. I wouldn't expect that to make a difference. The error message suggests that there is a problem with creating the drawing surface, which points at a more technical...

You are correct, we use Cairo to render SVG -- unfortunately that is also the reason why I am afraid it is not possible to add such active content to...

Hmm. If you installed GenomeTools via `apt-get` then you would not need to use `make`, you get the `gt` executable directly from the Ubuntu package. Just saying that because you...

Hey, sorry for the delay in replying. For TIRs, inexact sequence matching is implemented via the `-seed`, `-mat`, `-mis`, `-ins`, `-del` and `-xdrop` parameters. Their usage is identical to the...

Well, two matching consecutive nucleotides on each side of a candidate TIR element is a pretty unspecific pattern. You might get a lot of such hits (but that's probably what...

Ah, I just re-checked the code, and the tool should accept 0 and 1 as values for `mintsd`. But then again, I am not sure it would make much sense...