Sascha Steinbiss
Sascha Steinbiss
Do you mean the 'new' `GtWord` types?
It does not look like anyone does... Right?
Sorting can take some time indeed, but 6 days seem to be a bit long. Can you try just parsing the file with `gt gff3 ... > /dev/null` to see...
Thanks for the report -- though I'm not entirely sure what output you are expecting...? IMHO is a pretty unusual case, having a multi-feature (i.e. two mRNAs with the same...
Looks like in Gentoo the package does not contain any source anymore. Debian has a separate `-dev` package for that: https://packages.debian.org/buster/amd64/lua-md5-dev/filelist
Are you sure there are no more lines before the "This is a bug" line? I would need those to locate the issue, as they describe the error context. Also,...
I see. I'll keep this one open but can not do much without the test data. I am unfortunately not familiar with EDTA or LTRpred but perhaps that tool creates...
I am afraid the GFF3 file is not enough for me to replicate the issue, I would also need the other files (sequence FASTA and tRNA files). Basically I need...
Well, `feature_node.get_source()` technically returns a `gt.core.Str` object, not a Python string. This is only implicitly converted (with UTF decoding) in its `__str__()` method, see https://github.com/genometools/genometools/blob/master/gtpython/gt/core/gtstr.py#L48. The UTF8 decoding/encoding everywhere in...
I'd prefer to work on this with a bit more time, as I don't really have a lot of experience with the UTF encoding implications in the Python versions and...