Sascha Steinbiss
Sascha Steinbiss
AFAICS it's not that easy when attributes with multiple values are involved. These are supposed to be separated by commas, which must then obviously be escaped when they appear within...
Well, that would lead to additional overhead, e.g. in the bindings, in which I would really like not to have to worry about escaping/unescaping. But then the bindings would have...
Yes, I am currently using the custom visitors/streams in the Ruby bindings to write a ad-hoc tool to discover and fix some specific semantic errors on GFF3 annotations. As some...
Sounds good! Better space-wise than using pointers into the representation. Do you have suggestions for API extensions allowing multi-value access?
I agree.
Ouch! I hope you are getting better soon. Let's just keep this on our list, I can do it as well.
No, it's not. I can add it but it might take some time... Would the percent-encoding functions in Python's urllib also work as a workaround?
Have you tried deleting all files generated by `gt suffixerator` and retrying the suffixerator run? Also, can you rule out any potential issues with disk space, quotas etc.?
I don't think that simply using Tabix as a replacement for e.g. the interval tree or database would be enough to fill the work for a master thesis. I expect...
Thanks for reporting this! Can you please provide an example input set (sequence/index and GFF) for us to reproduce the problem?