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Failed to make first seed. Cannot continue

3

I am running into the error "Failed to make first seed. Cannot continue" I am running on mac with the command ulimit -n 2048; iva --threads 8 -f read1_val_1.fq.gz -r...

glinchan

Hello All, This is Mani. I have downloaded iva and tried to assemble viral genome using the basic command. I am getting this particular error and I tried run the...

manisenthils

Hello trying to use IVA on my Macbook Pro M1 (most recent OS) no problems with the installation but got this error: ``` iva -f R1_001.fastq.gz -r R2_001.fastq.gz iva_out RuntimeError:...

antoine4ucsd

IVA run error

1

The following command failed with exit code 1 bash run_kmc.sh The output was: ** Error: Cannot open temporary file /Users/Nicholas/Desktop/shiver/MyOutputDirectory/tmp.run_kmc.9_d1enoh/kmc_00253.bin

nbbosa

iva --test "Error! File hiv_pcr_primers.fa" not found. Cannot continue.

3

Hi, I tried installing iva via pip3 or with docker on my Mac and each time I tried to run `iva --test testdir`, it gives me this: ``` Running iva...

k39ajdM2

I have installed the latest version from iva (1.0.11) from GitHub however: $ iva --version 1.0.8 I am 100% certain that I am using the latest installed version of iva:...

el-mat

Hi, I tried the following command: `iva --trimmomatic trimmomatic-0.39.jar --adapters ../adapters.fasta -f ../AKULO_S1_L001_R1_001.fastq.gz -r ../AKULO_S1_L001_R2_001.fastq.gz MyOutputDirectory/ --threads 96` But came with this error: `The following command failed with exit code...

waqasuddinkhan

The following command failed with exit code 127 smalt map -n 10 -O -i 800 -y 0.9 /assembly/tmp.process_seeds.qh2fsh25/out.map_index reads_1.fa reads_2.fa | samtools view -bS -T reference_in.fasta - > /assembly/tmp.process_seeds.qh2fsh25/out.unsorted.bam The...

AntonioBaeza

Hi, For most cases, IVA works great for flu samples but sometimes, if the depth is not very high (

migrau

Hi all, I am interested in using IVA to assemble RNA virus genomes. What is the reported level of chimeric contigs yielded using this assembler? Does IVA provide an improved...

nologo68