gff3toembl

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I installed GFF3toEMBL via docker and this error appears when running the tool: ``` irene@irene-VirtualBox:~$ docker run --rm -it -v /home/irene:/data sangerpathogens/gff3toembl gff3_to_embl --authors "Ortega, I." --genome_type linear --classification PROK...

ireneortega

Installed via bioconda, got the following error: ``` Traceback (most recent call last): File "/scratch/schrat01/gff3_toembl_env/bin/gff3_to_embl", line 4, in __import__('pkg_resources').run_script('gff3toembl==1.1.4', 'gff3_to_embl') File "/scratch/schrat01/gff3_toembl_env/lib/python3.7/site-packages/pkg_resources/__init__.py", line 66 6, in run_script self.require(requires)[0].run_script(script_name, ns) File...

tobsecret

How to prepare a novel strain/isolate of a bacteria?

11

(Some months back I did this successfully to submit a new strain from a different genus, so while I might be doing something wrong/different, I suspect the ENA validator has...

peterjc

Bad line-breaks in long words, consider breaking at hyphenation

4

e.g. Prokka GFF file containing this in column 9: ``` product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ``` The EMBL file from converting the GFF gave: ``` FT /product="2-amino-4-hydroxy-6-hydroxymethyldihydropteridin FT e pyrophosphokinase" ``` Notice this...

peterjc

Can we pip install this?

2

tseemann