circlator
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sanger-pathogens
A tool to circularize genome assemblies
Hi, I assembled a genome using Canu v1.8 and wanted apply circlator v1.5.5. Now, as a dependency, circlator can install Canu v1.4 -- can you clarify whether the versions should...
Hello, I used the canu + Polish + circlator to assembly bacterial genomes. The largest contig in canu assembly is considered as 'suggestCircular'. But in the circlator : [merge circularise_details]...
`circlator merge [options] ` what's meaning of the original_assembly.fasta and new_assembly.fasta? original_assembly.fasta means the other assembly contigs using other methods?
Dear Developers and Users of Circlator: I got 8 error messages while trying to install the circlator 1.5.5 into my Ubuntu (16.04 LTS) in the virtual box. All the dependencies...
Hello, I'm trying to troubleshoot why my mitochondrial contig wasn't circularized, and in 03.assemble>warnings.log I found ` * 0:00:03.219 15M / 74M WARN General (launcher.cpp : 172) Your data seems...
Thank you for addressing my previous issue with nucmer detection ([#122](https://github.com/sanger-pathogens/circlator/issues/122)). However, having installed v1.5.5, I'm now having a different nucmer-related problem. Once again, `circlator progcheck` finds the correct version...
Hi, I am trying to install circlator on our HPC cluster. I am trying to use Singularity and convert the docker image, but I ran into an issue that I...
Hi, 1. I assembly contig by Flye and the result file could tell me which contig is circular. 2. Then I do some polishes by racon+medaka+pilon, and get different contigs...
Should we do polish（racon+pilon） or circlator first，any suggestion?
Hi, I cannot find any mention in the manual, wiki, or code of how circulator accepts or handles paired-end illumina reads. Interleaved? Ignores them? Thanks,
