ariba

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VFDB contains few genes that are not part of any cluster

2

Hi, ariba was running into weird issue while running on vf database: [E::hts_idx_push] Unsorted positions on sequence # 1: 109 followed by 11 OSError: building of index for /scratch/shadow/tmpr7wt7j_c/ariba_virulencefinder/ariba_virulencefinder/read_store.gz failed...

PovilasMat

How to determine SNP frequency in multi-copy genes (e.g., 23S rRNA).

2

Hello Martin, In your paper it is stated that ARIBA...."4) identifies SNP frequency in multicopy genes, which has been traditionally difficult to resolve due to the complexities of de novo...

slvrshot

Test files and megares v3 fix. Let me know if this does not work @martinghunt.

aastha-batta

Long read compatibility by tweaking the pipeline

1

Hi, Can we make ARIBA compatible with long reads by changing the mapping and assembly approach? I am planning to do this as my masters thesis project. I am a...

varun8476

Failed cluster: cluster

1

Hi, I am trying to run Ariba on my samples but it was giving an error. I installed dependencies with recommended versions. I installed bcftools 1.3.1. But still I am...

Iqrarshad