Bio-Tradis

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-mm paramater not working as expected

1

When specifying a tag and setting 0 mismatches (the default) the software finds numerous reads with the tag. However, if we change the number of mismatches e.g. to 1 then...

martinclott

Problem with insertion plots (files longer than they should be)

9

Hi, I wanted to raise another issue with insertion plots and suggest a possible solution for it. In issue #86 (closed), several users mentioned that their insertion plots would not...

irilenia

Could tradis_essentiality.R write out a text file with the essential and ambiguous change points. This would save the user from having to manually open each pdf and record the values...

BenjaminJPerry

On page three of "Using the Bio::TraDIS pipeline" pdf file the user is directed to download a .bam file using `curl`. The ftp link provided no longer exists, but the...

adamdoescode

test failures with samtools v1.10

1

Hello, Due to a version parsing bug, in Debian we can no longer build the bio-tradis package as we have upgraded to samtools v1.10. When bypassing the version check in...

mr-c

conda install提示需要perl-moose

1

Channels: - bioconda - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free - defaults Platform: linux-aarch64 Collecting package metadata (repodata.json): done Solving environment: failed LibMambaUnsatisfiableError: Encountered problems while solving: - nothing provides perl-moose...

wwhwwxlz

Are the insert_site_plots normalised?

1

Apologies, not so much an issue but rather a question. I was wondering if the insert_site_plots.gz are normalised based on total read counts? If not, is it possible to normalise...

CSmith-bug