Samuel Terkper Ahuno

how to allele-specific methylation calling?

1

Hi, may i inquire how to do allele specific/happlotype resolved methylation calling and analysis? a look in the literature requires phasing tools like whatsapp etc... i already did base calling...

PackagesNotFoundError: The following packages are not available from current channels:

3

Hi, i can't install gatk via conda/mamba. couldyou pls help pls see steps that i took ``` $conda config --add channels conda-forge $conda config --add channels bioconda $conda config --add...

dorado summary as input to pycoQC

4

**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] i want to be...

IGV shows Coverage not methylation values from BedMethyl

1

i want to see methylation values (column 11) not coverage (column 5, score) when i upload my bedMethyl file to IGV. how can i do that? i'm following the issue...

Dear developers, thanks for developing such a useful tool. my plot heatmap shows no signal just dark but the corresponding profiles look great. any ideas how i can debug this?...