Samuel Terkper Ahuno

icon indicating a website link https://scholar.google.com/citations?user=i-R6p6QAAAAJ&hl=en

icon company Weill Corenell Medicine icon location New York icon location Epigenetics, repeat elements, generative models & causal inference. @mskgreenbaumlab

Results 7 comments of Samuel Terkper Ahuno

Snakemake 8 not usable with Slurm clusters offering GPUs

this should work! in your `config.yaml` file, specify gpu for individual rules `slurm_extra: "'--gpus=2'"` ``` set-resources: rule_name: #.... slurm_extra: "'--gpus=2'" ```

2.2.2 build issues

hi, i have same issue. pls can anyone help?

2.2.2 build issues

hi @TimoLassmann , please see log file ``` The system is: Linux - 3.10.0-1160.45.1.el7.x86_64 - x86_64 Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded. Compiler: /usr/bin/cc Build flags: Id...

how to allele-specific methylation calling?

thanks!

IGV shows Coverage not methylation values from BedMethyl

thanks

dorado summary as input to pycoQC

Hi @sklages dorado version = `0.6.2+14a7067` pycoqc version = `pycoQC v2.5.2` numpy/pandas ``` # Name Version Build Channel numpy 1.19.5 pypi_0 pypi pandas 1.1.5 pypi_0 pypi ``` stats files ere...

PackagesNotFoundError: The following packages are not available from current channels:

i just installed pysam and a few softwares in the list but `mamba env create -n gatk -f gatkcondaenv.yml` still fails. am i missing something? ``` mamba env create -n...