Robert Vaser
Robert Vaser
I'll try to add it in the next refactor.
Gziped SAM files are supported, but without piping.
Accidentally pushed the wrong button :D
All formats that Racon accepts can be gziped.
Hi Tom, when using Illumina data, memory consumption equals to 1.5 * FASTQ size + PAF/SAM size + FASTA size + C, which in your case is around 1TB so...
Hi Tom, I had similar issues raised before and a new one appeared yesterday on a different OS. I'll try and find the bug on the data the user provided....
Well, I installed the same CentOS in VirtualBox and was able to run it successfully. I have no idea why it stalls on your server or the one in the...
Does the Illumina run stall at the same spot every run? Do you maybe have a smaller dataset which stalls as well? It is quite hard to debug on that...
Hi Tom, thanks for the follow up. I have no idea what could be causing it. Do you mind sharing one of those 10 chunks so I can test locally?...
Hi Tom, I have downloaded the data, you can remove it. Sorry for the late response! Best regards, Robert