Robert Vaser
Robert Vaser
Do you have a fastQ file? If so, what is the average quality score?
Could you provide the data for this example?
Hello, it can happen that Racon extends a given assembly. Try to evaluate with BUSCO or if you have cdna data run paftools asmgene. Best regards, Robert
Hello, when you do not use the `-c` flag, are you using any other CUDA options like `--cudaaligner-batches`? If not, than it is GPU Racon issue. @tijyojwad, could please inspect...
Hello, what would be the use case of this option except maybe running on clusters? I do not fancy the idea of parsing nonstandard formats especially when a simple preprocessing...
I still think that a preprocessing script is a better option. I'll think about it a bit more. Best regards, Robert
Hello, 1. please verify if `cluster_1329_ovlp_mapping_test_fwd.paf` is empty. 2. how many sequences are there in the target file `TAIR10_chr_all.fasta`? Not sure I understand what you are trying to achieve. Best...
How big are the genomic regions of each cluster?
And how did you obtain the clusters? You might try https://github.com/rvaser/spoa instead of Racon.
Hello, you can ignore those warning as the build process has finished. Best regards, Robert