Robert Vaser comments

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                                            Robert Vaser

layer begin and end positions are invalid!

Hello, which racon version are you using? Could you provide the data that is causing the error? Best regards, Robert

layer begin and end positions are invalid!

Could you please try the second iteration with the latest racon version (`1.3.3`)?

layer begin and end positions are invalid!

Versions `1.3.3` (latest commit on master, but not a release) and `1.3.2` are almost the same, the newer one has a smaller log while runnig. Best regards, Robert

layer begin and end positions are invalid!

Probably! Did you manage to run the newer version? Any errors there?

layer begin and end positions are invalid!

Sure, go ahead.

Make compiler flags opional instead of being auto detected

Hi Sebastian, the `bioconda` executable is built with `SSE4.1` (by adding `-DCMAKE_CXX_FLAGS="-mno-avx2"`) and without CUDA support. Should we add something for AVX512 as well? Spoa has a CMake flag called...

Make compiler flags opional instead of being auto detected

I'll see what I can do to make compilation easier!

Make compiler flags opional instead of being auto detected

Are you referring to Bioconda executable or compilation from source?

Make compiler flags opional instead of being auto detected

I think it is doable, will get back to you. I am swamped until end of October :)

Getting small contigs with long polyA and polyT stretches

Hi Mohamed, could you please elaborate a bit more or provide an example so we better understand your query? Best regards, Robert