Robert Vaser

The subsample of reads you have sent me finished successfully. If the PAF file also exits with the same error, would you be up to modify racon code a bit...

Hi Michael, could you first try `v1.4.9` (latest commit) from https://github.com/lbcb-sci/racon? I had a similar bug in issue #140 which should be fixed. If that does still not work, let...

Can you maybe share your data? If not, please add before line https://github.com/lbcb-sci/racon/blob/master/src/window.cpp#L55 the following: ```cpp fprintf(stderr, "%u %u %u %u\n", begin, end, sequence_length, quality_length); ``` Recompile and let me...

I got an email with values `0 499 512 0` but don't see this reply here. Nevertheless, the numbers look fine and I am not sure what is wrong. Can...

Haha, happens :) Best regards Robert

Hi John, longer window lengths should yield a bit higher accuracy, although there is no guarantee (I have a comparison somewhere, will update the comment next week). The speed downgrades...

If miminap2 was able to map a whole read over a short gap (without break points), then racon will probably fill the gap. Otherwise, you have to fill the gap...

Hi Michal, it depends on the order of polishing. If you run PB Racon - PB Arrow - Illumina Racon, I think you should be fine (if you have decent...

Hi Peter, Racon only uses base qualities (if they are present) so you won't get the same accuracy level as with Arrow. But if you have Illumina data, I think...

Hello, which cmake version do you have? I guess removing `EXCLUDE_FROM_ALL` from https://github.com/isovic/racon/blob/master/CMakeLists.txt#L46 and https://github.com/isovic/racon/blob/master/CMakeLists.txt#L58 should resolve this issue. Best regards, Robert