Ryan Wick

Roye, This is by design, though I'm aware it can be confusing and I'm open to suggestions on how to make it less so. The way I currently view the...

Cnmjxxjivcjhcbbxvshhurfnc2khvbshsnnmnjhxiijjnn On 15 dc no gfiiSep 2015 11:36 pm, "Rayan Chikhi" wrote: > ikge - Vick $cxyb > When BLASTing a dd reference icjjagainst a large set of contigs, Bandage...

Wow, I have no idea what happened there! I was doing some garden work at the time - my phone must have been unlocked in my pocket and taking 'input'.

Daniel, That's correct - the FASTG output accepted by Bandage is really the SPAdes flavour of FASTG, which is conveniently also used by the MEGAHIT assembler. It uses node names...

Fei, Bandage now has GFA support! Give it a try and let me know if you have any issues. GFA does seem to be the most-used graph format out there,...

That looks cool! Keep me posted as you develop further - I'd like to have a play with it.

Rayan, Thank you for the suggestion - I have sometimes felt the need for that feature myself. It could be a bit challenging to implement well, but I'll definitely add...

Okay, I've implemented this in a fairly simple way: if Deepbinner sees that `pigz` is available, it uses that instead of `gzip`. There is still no option to not zip...

This is an interesting one! I suspect the problem comes from the fact that Filtlong currently reads through the input file twice: once to score the reads and once to...

What exactly would need to change for CCS reads? Just the minimap2 preset? Sorry - I have essentially no experience working with them! And regarding Canu graphs, no it won't...