Ryan Wick

That is a good idea - I'll add it to my (ever-growing) future feature list. Thanks!

First, as an aside, I'll mention a relatively new Bandage feature: linear graph layout. It applies when your graph has a general linear structure and low-numbered segments tend to precede...

Okay, I'm getting a better idea of the problem here. If I understand correctly, you define an 'inversion' as a case where the positive strand of one segment connects to...

I haven't used FermiKit before, but is it possible that like SPAdes, it doesn't use the segment sign in any significant way? Using the same example as in my previous...

That wouldn't be too hard, but I should reiterate here that Bandage still doesn't support complex overlaps (with insertions/deletions). Even mismatches aren't really supported - if you extracted a path...

Steve, I am planning on revamping the Bandage labels, including adding stuff like edge labels, so this feature is coming - I promise! Hopefully not too far in the future......

Alex, what is the exact Bandage command you're using? Specifically I'm curious if you're using `Bandage image` and including some labels. E.g. `Bandage image graph.fastg image.jpg --names` I ran into...

I've put a small fix into the development branch of Bandage to not require a GUI when `--help` or `--helpall` is used, but that doesn't fix your main problem. And...

Hmmm, that's a tough one, and I don't see any obvious way around it. I think the problem stems from the fact that I'm trying to have Bandage be both...

I haven't found a way around this one, so we'll see if Stack Overflow can help me out: http://stackoverflow.com/questions/36930120/symbolic-link-to-binary-executable-in-mac-app-bundle