Ryan Wick

If you're running this on a remote server, then can you try connecting with `ssh -X` instead of just `ssh`? It's a strange issue that I don't really understand, but...

This stuff is tricky. I tried to make Bandage just call `which makeblastdb` to see where it is, but I fear that Bandage doesn't have access to the same `PATH`...

Can I ask which version of Ubuntu you're using? I know that in some versions/configurations of Unity (the default graphical shell for Ubuntu) the menu bar is hidden until moused...

Okay, I suspect the issue will be centred around using MobaXterm to run Bandage remotely. I still don't know if that cryptic XCB error is important - possibly not (I've...

Rayan and Roye, There is currently a somewhat crude method for highlighting paths in Bandage: go to the 'Output' menu and select 'Specify exact path for copy/save'. A window then...

Okay, I'll go ahead with adding support for a '.paths' file. I'll probably include GFA paths support as well, as I'd like Bandage to support the GFA format as much...

When Bandage does the layout, it re-seeds the random number generator for each component to avoid this effect where lots of graph segments end up with the same shape: ![screen...

Yes, that would be a nice feature! It unfortunately seems to behaving differently on different platforms, so it might take a bit of work to make sure that implementing it...

I expect it is a BLAST thing, because I just tried the same thing you described and got more than 400 hits per query: ![screen shot 2017-03-23 at 3 02...

I agree, the current silent failure is bad! I did a quick fix and pushed it up to the development branch (https://github.com/rrwick/Bandage/commit/2db0b0cd52bbfd0b42d921167157c594fac08942) which makes Bandage refuse to load such graphs....