Ryan Wick

icon indicating a website link https://rrwick.github.io

icon company University of Melbourne icon location Melbourne, Australia icon location I'm a bioinformatician with a focus on bacterial genome assembly.

Results 4 issues of Ryan Wick

kmer2read_distr puts invalid taxids in database*mers.kraken file

Hi, I'm building GTDB-based Kraken2+Bracken databases, and I encountered a strange error during `bracken-build`. The problem seems to stem from the `kmer2read_distr` program which puts a lot of invalid taxids...

Add a custom adapter sequence option

In [this issue](https://github.com/rrwick/Porechop/issues/4) Miles described changing the source code to include a new adapter. I should make an option where users can pass in new adapter sequences via FASTA so...

enhancement

How to best call variants with ska lo?

2 comment

Hello, and thank you for developing SKA and the new `ska lo` subcommand! I'm interested in using SKA to call variants against a reference using a single assembly. This is...

Fix behaviour of indels

Hello! Thank you for writing this tool! I was using it in a project to convert the `.snps` file made by [dnadiff](https://github.com/mummer4/mummer#dnadiff) into a VCF, which I later was applying...